Friday, May 27, 2011

I'm famous--yay?

Several people have pointed out that I (and my commenters) are quoted in Senator Colburn's "report" on waste in government sponsored research. Given that the quoted text from the blog is taken so completely out of context gives me great confidence in my interpretation that much of the report consists of actual facts taken out of context so as to distort their original meaning. Prodigal Spouse thought my annoyed reaction (to the out of context quotation part anyway) was pretty funny, reminding me that the blessing and curse of blogging means that once the words are out in the world, they take on a life of their own. This is always a good lesson to remember! In fact, one of today's top traffic sources to the blog is a Google search on some of the quoted text from the report. (For those looking for the quoted post, it is here).

Having flipped through the report, it mostly consists of mocking different research projects as wastes of money. Given that most of the great industrial basic research labs are gone, the National Science Foundation (NSF) is the last major funder of basic research in many fields in the US. It makes me very sad to see all this ink spilled on attacking the NSF, considering that the entire annual NSF budget is a rounding error on what the US spends annually in Iraq and Afghanistan for results much less likely to be relevant to US taxpayers. I totally agree with Dr. O here--if Senator Colburn has a problem with how NSF funds are being spent, he should have requested hearings or reports from the program managers at NSF, or called on eminent scientists in the field to determine why these projects were funded. It is pretty easy to pick apart many basic research projects based on just the title or abstract (which focus on the work to be done, not on where the work fits in the big picture of the field). It is much harder to predict which projects will be the ones that lead to key breakthroughs ahead of time, which is why they call it research.

Wednesday, May 25, 2011

Designing lab-based courses

As part of my teaching assignment last year, I supervised a lab class that was known to be in need of serious improvement. Last year, I ran it as is to get a feel for the issues, and this year (which means this summer, since I also teach a lecture course in the Fall) I am redesigning the course now that I've seen the problems with it. Now that I am teaching a full load, I've decided to front-load this one, and spend a lot of time on it now, pulling back on it after the course is set up with (hopefully) only minor fixes in the future (like redoing sections of the lab manual or grading rubric, which is easy vs selecting and testing new labs, which is hard).

Rather than wade through education journals, my strategy is to ask some friends what their departments do, and also use Google to see examples of labs run at other schools. I found it hard to decide if students could actually do the labs discussed in the education journals, and went with a more battle-tested approach. The labs are still a bit cookbookish, I think, but this is a low level class where the students need to learn lab safety and technique as much as seeing concepts from their lecture classes demonstrated in a hands on way. I am also incorporating more writing into the course (see writing rant here), since I think technical writing is an important skill too. I've also been thinking about why we run these labs in the first place, so I am focusing on labs that highlight concepts that I've seen students struggle to master in lecture courses.

I have to say that this is turning out way better than I thought. I am only picking new labs that sound fun to me--if I took this class now, I would LOVE it. We are doing labs with a higher fail rate where the trade-off is a more interesting experiment. Just doing the supervising of a lab course is most of the bad things about teaching (the whining, the problems, the paperwork) without the good things. At least now I get to have some fun!

Wednesday, May 18, 2011

Announcing the alternate science career information aggregation page

As promised, this is a page devoted to linking possibly useful information for scientists looking outside academia. I hope some of you looking for non-academic career information will find it useful. This is by no means a complete list, so if you know of other useful sites, let me know, and I will add them in!

Permalink available on the Prodigal Homepage.


Blog posts about non-academic careers:


CV vs resume:


Possibly interesting career guidance:


Interesting non-academic science online discussion:

Sunday, May 15, 2011

Access to research courses for credit

I've been having an ongoing discussion with a colleague about access to research opportunities for undergraduates. The top undergrads have their pick--REU programs at lots of different universities and labs, research for credit at Prodigal U, research for pay anywhere (easiest at Prodigal U, though). Undergrads with weak track records (ie low GPA) have a much harder time. Our department has a GPA cutoff of 3.0 to enroll in our research for credit course. Students with a lower GPA can find someone to pay them, but that can be more of a challenge when competing with much stronger students.

Thus far, I have had really great undergrads in my lab. As a TT prof, I pretty much only take top students who are enthusiastic about joining the lab, since I don't have the time or resources to waste on reluctant or completely non-productive students. I don't expect publication-quality work from an undergrad (though it sure is nice when it happens!), but I do expect them not to waste my supplies and samples doing pointless or incorrectly implemented experiments after a reasonable amount of training.

My colleague feels strongly that students who want an opportunity to do research should be allowed to do so. This colleague says we should encourage those interested in science, and doesn't want to be a gatekeeper. (I should note that this person does NOT and never has supervised the research course for credit).

I tend to agree with Prodigal Department's policy--a weaker student is unlikely to get much out of an independent research experience if they can't learn concepts in a more structured class. I know that there are some professors who would take "free" labor in the lab, regardless of prior track record, so I am sure that opening up the research course to all comers probably would not be a capacity issue. I know that as a research supervisor, I would be unlikely to give a meaty project to a weak student.

I don't think it is good to set up a student in a situation where they cannot (or are unlikely to) succeed. I don't think just anyone can do research--in order to get anything out of it, students need prior preparation. A whole summer of repeating cookbook experiments or washing glassware might help out a labor crunch in the lab, but won't do much to develop an undergrad scientist (or give them a taste of real research). This is something better left for a paid lab worker, not an undergrad research experience for credit. Having some sort of entry standard in a for-credit experience protects both the student and the professor, in my opinion.

Friday, May 6, 2011

More on non-academic jobs

I've been blogging now for a year (which I find hard to believe). I've found blogging to be both more fun and more work than I thought before I started. I have even more respect for FSP, who manages to be a successful full professor, a parent, and make high quality posts 5 days a week!

In terms of reader interests, my most popular posts have been about:

1. "Alternate" careers
2. How search committees work
3. TT interviewing

The thing that boggles my mind is the the first post on this list (on careers other than academia) has more hits than the rest of my top 5 posts combined. It sometimes gets more daily hits 8 months after I wrote it than new posts. I wonder what this really says about the availability of information about career options to young scientists? Most of information out there seems descriptive of career sectors, not actual jobs people do, and this still seems to be true (especially at university-run career workshops). This is something I just don't understand--I mean TT positions have ALWAYS been the minority option for graduating PhDs, even in the good old days of the fist GI bill and the Space Race. Surely every university has alumni doing interesting things with their degrees that they can call to participate in these things!

When I was a grad student, I knew a fair bit about the area of industry my advisor used to work in before becoming a professor, but not much about any other field. Even knowing that much seems to have been unusual for a PhD student in science. I suppose career information at the grad level is no worse than career information at the undergrad level (when I knew NOTHING about the jobs I could get with my degree), but it feels like there should be more information around in the age of the Internet.

In deciding to go back to academia, I read a lot of blogs about what it was like starting out in academia to get a feel for my decision. I don't really see many blogs out there by recent grads starting out their industry positions (or even many blogs by industrial scientists of the non-pharma persuasion, though there are a few good engineering blogs around). To be honest, I highly doubt I would have blogged about my National Lab position--I certainly would have worried about getting caught, and there are pretty much no protections for staff if their supervisors choose to block an employee for pretty much any reason other than outright discrimination. I imagine this is true for most people in non-academic positions, and I suspect contributes to the vast information asymmetry between the availability of information about academic other careers. One can also make the case that the work culture in academia is more uniform than the work culture in other sectors, so it is easier to come up with general tips.

Either way, I am thinking about setting up a page like Dr. Becca's TT job advice aggregator for non-academic jobs. My own students are getting more interested in planning their next step as they progress, so this has been more on my mind.

Tuesday, May 3, 2011

Sometimes, it's the small things

After much badgering from Prodigal spouse, I recently traded in my beater bike for a newer, nicer one, and boy does this make my commute better!

I am the sort of person who is reluctant to "waste" money on something new, when I already have something that gets the job done. But sometimes, it makes sense to trade in the old and barely functional for something better. I ride my bike every day the weather permits. Moving from rickety, noisy and hard to use to quiet, comfortable, and fully functional is a joy (and safer to boot). I may still be really snowed under at work and home, but for half an hour each direction, I am enjoying life.

Friday, April 29, 2011

Sneaking in at the end of the month (#scimom)

I am a scientist and I am a parent. Even more, I am a parent of more than one child, and I don't even have tenure yet! As a student, the received wisdom was that parenthood is incompatible with professorship (unless you are the absentee parent sort). People who wish to attempt otherwise should ONLY do it post-tenure, and of course more than one child shows you like commitment. The path of my life ended up violating all of this received wisdom, and yet I am satisfied and still here.

Being a parent and a scientist has been a great combo for me. My kids have a wonder about them that touches all aspects of my life. In parenting them, I have learned to be patient in explaining things, to expect off-the-wall questions, and to enjoy the awesomeness of our world. I think this has made me a better teacher in my classes.

In my career, being a parent forces me to be more efficient. I can't surf for hours a day, because I can't work between 5 and 8 or 9 pm every evening, so I need to make my work time count. At National Lab, I became much more productive after the arrival of Little Prodigal#1. Even more, having this enforced time away from my work helps me return to it with fresh eyes after the kids are asleep.

Yes, it can be hard to balance kids, work, marriage, and personal time, but how many things in life that are worthwhile are also easy?

Thanks to Gerty-Z for her post on this topic pointing me to the #scimom project started by David Wescott.

Wednesday, April 27, 2011

Publishing negative results

Recently, I found my way over to the All Results Journal (now available in Biology, Nanotechnology, Physics, and Chemistry flavors, though issues are only available for Chemistry and Biology). In their first editorial, the editors of All. Res. J. Chem. explain that:

We are pleased to introduce you to The All Results Journals: Chem (All Res. J. Chem.). A very particular journal, as it publishes fully indexed chemical articles and reviews that challenge current models, tenets and dogmas. This journal represents the first open access source for chemical research concerning negative results and will be a valuable resource for researchers all over the world, including those who are already experts and those entering the field.

The All Results Journals: Chem immediate goal is to provide scientists with responsible and balanced information in order to avoid unproductive synthetic routes, improve experimental designs and economical decisions. Many journals skew towards only publishing “positive” data; that is, data that successfully proves a hypothesis. The All Results Journals: Chem is the home for negative or “secondary” data: experimental documentation of hypotheses that turn out not to be true, or other experiments that do not lead to an advance of a specific hypothesis but are nevertheless a true rendering of that experiment. For example, if a researcher sets up an organic reaction and a variety of molecules do not react in exactly those conditions, it would be very useful for other researchers to know this (to avoid time and wasting money).


The journal editors are apparently targeting three types of difficult to publish data: experiments that fail, experiments that are incomplete or inconclusive, and experiments that disagree with current mainstream scientific understanding. I am not sure I really see a value here, though maybe I am just getting old and crotchety.

Experiments that fail. When I was a student, I thought publishing failed experiments would be a very valuable resource. With more scientific experience, I realize that many groups will wonder whether it was the experiment or the execution that failed, especially for negative (or inconclusive) results that go against scientific intuition or prior experience on related systems. Publishing this sort of failed experiment MAY help, but may not.

Experiments that are incomplete or inconclusive. Personally, I don't think incomplete or inconclusive experiments really should be published. Yes, there is lots of data languishing in notebooks, but that is at least in part due to lack of motivation and/or time to write the (probably minor impact) results up. Incomplete experiments can be misleading, and inconclusive experiments either need rethinking, better design, better instrumentation, or more data. Both of these situations are likely caused by funding running out or someone who was working on the problem leaving the lab. This leads straight back into lack of time/motivation to write.

Experiments that disagree with current mainstream scientific understanding. I am not sure we need a new journal for this. Shouldn't current journals be eager to publish results that conflict with current understanding (and therefore advance science)? I know that truly new, truly innovative stuff sometimes has a hard time getting published, but still extraordinary claims should require extraordinary evidence, shouldn't they?

I totally agree that the literature is biased towards positive results. But many negative results are currently available (and more and more frequently searchable) in Masters and PhD theses. It will be a real shame when dissertations become introductory and concluding chapters wrapped around published papers (as is happening more and more). So maybe we do need something new? With the barrier to Web publication low, I certainly admire the editors for giving it a try!

Now the All Results journals may end up being an excellent resource for scientists moving into new areas or pushing the edges, but I have my doubts. The cynic in me thinks that it will mostly be a CV-padding tool for future academics.

Wednesday, April 20, 2011

Following your bliss vs. getting paid

In a comment, Xombi asked about research you care about vs. putting food on the table. GMP recently also had a post on this topic. As GMP said in her comments, Dr. Sneetch pretty much summed up this issue in a comment--it is a lucky few that can spend most of their time on following their own interests. Everyone else has to spend most of their time on what funding agencies think is important.

Most of the time, I can find interesting aspects to fundable research that I enjoy. This is what keeps the job fun. One thing to keep in mind is that startup funds can seem like freedom to follow your research bliss. I think this is a big mistake. You need to use your startup funds to get evidence that your lab works on RELEVANT and interesting research. The data you generate is the preliminary data for your proposals, and has to show that you are fundable! My strategy was to select target funding agencies/program officers, and shape my starting research to show what I can do in their areas of interest. I picked areas that I am interested in, of course, but fundability has to be a bigger concern than personal interest if I want to keep my lab going.

In a National Lab setting, I found that I could carve out some time to work on my own research interests, especially before I became a PI. As a postdoc, you should have minimal responsibilities in supervision and proposal writing (although if you want to get hired, you need to be somewhat involved in this so you can see how things work). If you work efficiently, you can get your own work done, and then work on side projects. No one will really care if you use National Lab resources as long as it leads to papers/patents/funding. My side projects as a postdoc became the core of proposals (both mine and my PIs--you do need to show your sponsor that you add value after all!).

I don't think that fundable work is in opposition to good work. It is possible to do good, important work that is of interest to funding agencies, and I think this is what most researchers try to do. There is some room to shape the scope of the work after the project is funded, but of course the goals of the program officers need to be kept in mind if you ever want to be renewed/funded by the same agency again! But this shouldn't impact the quality of the science in the end. Just the excitement of the PI.

Tuesday, April 12, 2011

More on recruiting: grades and research

Recruiting season is winding down, and I have been thinking about GMP's post on the topic from a week or so ago. As I said in my comment, I find prior research experience to be the most important consideration for me. Students with no exposure to research have no real idea what it is like, and can therefore easily not understand what they are getting into in grad school. Also, sometimes people just have really bad hands in the lab, and would be better served with a less hands on group than mine.

In my experience, grades are actually a poor predictor of success (once above a certain minimum threshold of competence). I need to know my students can pass our grad level courses required for their program, and grades are a good predictor for this. I've found that many students with high GPAs are not necessarily good at research. Some of them are profoundly disturbed that there may not be a "correct" answer to their research problem (happened to a friend of mine). Others are good at schoolwork, but not so good at applying that knowledge to the real world. Some are brilliant at everything including research, and these are the ones I want! High GPA does make it easier to get fellowships, so I am happy to attract 4.0 students, of course, but I don't accept students on GPA alone, nor do I use GPA as a filter. My best students right now were closer to 3.0 then 4.0 as undergrads.

I do look for a GPA trending up with time if the GPA is on the low end of our admitted pool. This is often a sign that a student has put it together in terms of figuring out how to work/learn/understand some key concept that eluded them the first time around, but may disqualify them from "better" programs. I don't consider students with a significantly downward trending GPA unless they are super excited about my research and have kick ass research experience and letters. I don't look at GRE scores that much either, other than to make sure they are adequate. I prefer students with good verbal scores, since writing is a big part of what we do, and this is harder to probe in a meeting.